In traditional pulmonary nodule detection algorithms, there are problems of low detection sensitivity and large number of false positives. To solve these problems, a pulmonary nodule detection algorithm based on deep Convolutional Neural Network (CNN) was proposed. Firstly, the traditional full convolution segmentation network was simplified on purpose. Then, in order to obtain high-quality candidate pulmonary nodules and ensure high sensitivity, the deep supervision of partial CNN layers was innovatively added and the improved weighted loss function was used. Thirdly, three-dimensional deep CNNs based on multi-scale contextual information were designed to enhance the feature extraction of images. Finally, the trained fusion classification model was used for candidate nodule classification to achieve the purpose of reducing false positive rate. The performance of algorithm was verified through comparison experiments on LUNA16 dataset. In the detection stage, when the number of candidate nodules detected by each CT (Computed Tomography) is 50.2, the sensitivity of this algorithm is 94.3%, which is 4.2 percentage points higher than that of traditional full convolution segmentation network. In the classification stage, the competition performance metric of this algorithm reaches 0.874. The experimental results show that the proposed algorithm can effectively improve the detection sensitivity and reduce the false positive rate.